<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>FmBatch</title><revhistory><revision><revnumber>3</revnumber><date>2013-03-07 21:22:57</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>2</revnumber><date>2006-07-27 14:42:08</date><authorinitials>devel01.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>1</revnumber><date>2006-07-04 15:01:23</date><authorinitials>Scripting Subsystem</authorinitials></revision></revhistory></articleinfo><informaltable><tgroup cols="1"><colspec colname="col_0" colwidth="100*"/><tbody><row rowsep="1"><entry colsep="1" rowsep="1"><para><emphasis role="strong">Using a field-map to undistort EPIs</emphasis></para><para><ulink url="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/imaging/FmBatch/imaging/FmBackground#">Background</ulink></para><para><ulink url="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/imaging/FmBatch/imaging/FmPower#">Improvement in power!</ulink></para><para><ulink url="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/imaging/FmBatch/imaging/FmFieldmaps#">Acquiring fieldmaps</ulink></para><para><ulink url="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/imaging/FmBatch/imaging/FmDownload#">Download</ulink></para><para><ulink url="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/imaging/FmBatch/imaging/FmRequirements#">What you'll need to undistort an EPI data series</ulink></para><para><ulink url="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/imaging/FmBatch/imaging/FmReference#">Guide and reference</ulink></para><para><ulink url="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/imaging/FmBatch/imaging/FmExample#">Step-by-step example</ulink></para><para><link linkend="">Batch mode</link></para></entry></row></tbody></tgroup></informaltable><section><title>Batch mode</title><para>There is a batch method that allows you to write MATLAB scripts that automate undistortion. </para><para>A reference guide to the batch mode parameters in <ulink url="http://imaging.mrc-cbu.cam.ac.uk/pdfs/fm_batchmodedescription_v3p03.pdf">PDF format is here.</ulink> </para><para>An example routine is given in the exampledataset directory (see step-by-step example). </para></section></article>