= FMRI analysis stream =

This page described the FMRI analysis stream for data from the CBU.  We may mention data from the WBIC from time to time.

For the processing stream for older Bruker data from the WBIC, see BrukerAnalysisStream

See AutomaticAnalysisRecipes for some description of the automatic recipes used by the [AutomaticAnalysisIntroduction aa] tool
 * The analysis begins with FetchingData
 * Check for CommonArtefacts
 * Run DataDiagnostics
 * If you find bad data, consider whether to RemoveBadScans
 * SliceTiming 
 * [wiki:FmBackground Undistort EPIs using field maps]
 * MotionCorrection
 * ProcssingCoregistration
 * ProcssingNormalization
 * ProcssingSmoothing
 * ProcssingStatistics
 * SmallVolumeCorrection
 * RegionAnalysis