__'''Second Level Analysis: Multiple Comparisons, SVC, ROI analysis'''__<<BR>>

You can download a copy of Nadja and Ben's talks here: [[attachment:SecondLevel.ppt]] [[attachment:ROIAnalysis.pptx]] <<BR>>


__'''Web Resources'''__<<BR>>

Below is a list of web resources used in the talk <<BR>><<BR>>
[[http://fmri.wfubmc.edu/downloads/WFU_PickAtlas_User_Manual.pdf|PickAtlas]]<<BR>>
[[http://www.fil.ion.ucl.ac.uk/spm/|UCL's Pages]]<<BR>><<BR>>

'''Multiple Subjects'''<<BR>><<BR>>
[[http://mindhive.mit.edu/node/92|RFX and FFX on The MIT Wiki]]<<BR>>
[[http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/pdfs/Ch12.pdf|Penny and Holmes(2003)]]<<BR>><<BR>>
'''ROI Analysis'''<<BR>><<BR>>

[[http://mindhive.mit.edu/node/101|ROI FAQ on The MIT Wiki]]<<BR>>
[[http://marsbar.sourceforge.net/index.html|MarsBaR]]<<BR>>
[[http://imaging.mrc-cbu.cam.ac.uk/imaging/MniTalairach|tal2mni & mni2tal scripts]]<<BR>>


__'''References'''__<<BR>><<BR>>
'''Random Field Theory'''<<BR>><<BR>>
[[attachment:Brett2003.pdf]] Brett et al., (2003) An Introduction to Random Field Theory<<BR>>
[[attachment:Worsley2003.pdf]] Worsley et al., (2003) Developments in Random Field Theory

'''ROI Analysis'''<<BR>>

Friston, K. J., Rotshtein, P., Geng, J. J., Sterzer, P., & Henson, R. N. (2006). A critique of functional localisers. ''Neuroimage'', 30(4), 1077-87. <<BR>>
 [[http://www.ncbi.nlm.nih.gov/pubmed/16635579|PMID: 16635579]]<<BR>>
Saxe, R., Brett, M., & Kanwisher, N. (2006). Divide and conquer: a defense of functional localizers. ''Neuroimage'', 30(4), 1088-96; discussion 1097-9.<<BR>>
 [[http://www.ncbi.nlm.nih.gov/pubmed/16635578|PMID: 16635578]]<<BR>>
Poldrack, R. a, & Mumford, J. a. (2009). Independence in ROI analysis: where is the voodoo? Social cognitive and affective neuroscience, 4(2), 208-13.<<BR>>
 [[attachment:IndependenceROI.pdf]] <<BR>>
Begging the Question: The Non-Independence Error in fMRI Data Analysis, Edward Vul, Nancy Kanwisher<<BR>>
 [[attachment:VulKanwisher.pdf]] <<BR>>
Nieto-Castanon, A., Ghosh, S. S., Tourville, J. a, & Guenther, F. H. (2003). Region of interest based analysis of functional imaging data. ''Neuroimage'', 19(4), 1303-1316. <<BR>>
 [[http://ukpmc.ac.uk/abstract/MED/12948689/reload=0;jsessionid=E0DA881F9ABA5E384C4618EDD4663065|DOI: 10.1016/S1053-8119(03)00188-5]]<<BR>>
Poldrack, R. A., (2007) Region of Interest Analysis for fMRI. ''SCAN'', (2) 67-70<<BR>>
 [[attachment:PoldrackROIAnalysis.pdf]] <<BR>>
Kawabata, Devlin (2011) Improving the reliability of functional localizers. ''Neuroimage'' <<BR>>
 [[http://www.ncbi.nlm.nih.gov/pubmed/21600292|PMID: 21600292]]