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| = Information on using and tuning SPM = | = Getting started with SPM = This is a practical guide to using SPM. If you're after theory, you might want the Analysis Principles section from the menu on the left. |
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| * [http://www.fil.ion.ucl.ac.uk/spm/ FIL/SPM home page] * SpmQuickStart |
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| * SpmWithPentium4 - tuning SPM for the Pentium 4 chip * [http://gnumex.sourceforge.net/ Compiling SPM on Windows] * SpmBenchmarks - benchmarks from machines running SPM * SpmBatch - batching SPM jobs |
= SPM tips and tools= |
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| * SpmGraphics - using the SPM output graphics for making figures | |
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| * TrimmingImages using SPM | |
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| * ParametricModulations - and the issue of orthogonalisation | = Automating SPM = * [:AutomaticAnalysisIntroduction:aa] - automating SPM analyses * SpmBatch - batching SPM jobs = Programming with SPM = * SpmGraphics - using the SPM output graphics for making figures * TrimmingImages using SPM |
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| * Rik Henson's SpmMiniCourse2005 * CBU SpmMiniCourse2007 * Rik Henson's SpmMiniCourse2008 |
* SpmWithPentium4 - tuning SPM for the Pentium 4 chip * [http://gnumex.sourceforge.net/ Compiling SPM on Windows] * SpmBenchmarks - benchmarks from machines running SPM |
Getting started with SPM
This is a practical guide to using SPM. If you're after theory, you might want the Analysis Principles section from the menu on the left.
SpmVersions - and how to launch them at the CBU
= SPM tips and tools=
[http://www.sph.sc.edu/comd/rorden/mritut.html Normalizing anatomical MRI scans of damaged brains] using SPM and MRIcro.
MaskedEpiNormalization - using the EPIs for spatial normalization.
DisplaySlices - display multiple image slices with activation data using matlab / SPM
Changing the location of images in an SPM design with SpmAnaCd
SpmTips - not otherwise classified tips and fixes
Automating SPM
[:AutomaticAnalysisIntroduction:aa] - automating SPM analyses
SpmBatch - batching SPM jobs
Programming with SPM
SpmGraphics - using the SPM output graphics for making figures
TrimmingImages using SPM
[http://www-psych.stanford.edu/~kalina/SPM99/ Kalina Christoff's SPM99 page] - a variety of interesting programs, protocols and discussions.
The [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/ Human Brain Function book] - these are a series of chapters covering theory and to some extent implementation in SPM of the areas below. Be warned that some of these chapters are aimed at quite a high level, and may be hard to follow for those without relevant background.
[http://www.fil.ion.ucl.ac.uk/spm/dox.html Papers published by the FIL group on SPM] - these are available online via the SPM website, as are some other important papers on related theory.
[http://www.fil.ion.ucl.ac.uk/spm/course/ SPM course notes]
* SpmWithPentium4 - tuning SPM for the Pentium 4 chip
[http://gnumex.sourceforge.net/ Compiling SPM on Windows]
SpmBenchmarks - benchmarks from machines running SPM
For help on SPM and other analysis topics, see AnalysisHelp