|
Size: 1862
Comment:
|
Size: 1951
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| = Using SPM = | = Getting started with SPM = |
| Line 5: | Line 5: |
= SPM tips and tools= * [http://www.sph.sc.edu/comd/rorden/mritut.html Normalizing anatomical MRI scans of damaged brains] using SPM and MRIcro. * MaskedEpiNormalization - using the EPIs for spatial normalization. * SpmPlottingAdjustedData * DisplaySlices - display multiple image slices with activation data using matlab / SPM * Changing the location of images in an SPM design with SpmAnaCd * SpmTips - not otherwise classified tips and fixes = Automating SPM = * [:AutomaticAnalysisIntroduction:aa] - automating SPM analyses |
|
| Line 7: | Line 19: |
| * [http://www.sph.sc.edu/comd/rorden/mritut.html Normalizing anatomical MRI scans of damaged brains] using SPM and MRIcro. * MaskedEpiNormalization - using the EPIs for spatial normalization. * SpmPlottingAdjustedData |
= Programming with SPM = |
| Line 13: | Line 21: |
| * DisplaySlices - display multiple image slices with activation data using matlab / SPM | |
| Line 15: | Line 22: |
| * Changing the location of images in an SPM design with SpmAnaCd * SpmTips - not otherwise classified tips and fixes * ParametricModulations - and the issue of orthogonalisation |
Getting started with SPM
This is a practical guide to using SPM. If you're after theory, you might want the Analysis Principles section from the menu on the left.
SpmVersions - and how to launch them at the CBU
= SPM tips and tools=
[http://www.sph.sc.edu/comd/rorden/mritut.html Normalizing anatomical MRI scans of damaged brains] using SPM and MRIcro.
MaskedEpiNormalization - using the EPIs for spatial normalization.
DisplaySlices - display multiple image slices with activation data using matlab / SPM
Changing the location of images in an SPM design with SpmAnaCd
SpmTips - not otherwise classified tips and fixes
Automating SPM
[:AutomaticAnalysisIntroduction:aa] - automating SPM analyses
SpmBatch - batching SPM jobs
Programming with SPM
SpmGraphics - using the SPM output graphics for making figures
TrimmingImages using SPM
[http://www-psych.stanford.edu/~kalina/SPM99/ Kalina Christoff's SPM99 page] - a variety of interesting programs, protocols and discussions.
The [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/ Human Brain Function book] - these are a series of chapters covering theory and to some extent implementation in SPM of the areas below. Be warned that some of these chapters are aimed at quite a high level, and may be hard to follow for those without relevant background.
[http://www.fil.ion.ucl.ac.uk/spm/dox.html Papers published by the FIL group on SPM] - these are available online via the SPM website, as are some other important papers on related theory.
[http://www.fil.ion.ucl.ac.uk/spm/course/ SPM course notes]
* SpmWithPentium4 - tuning SPM for the Pentium 4 chip
[http://gnumex.sourceforge.net/ Compiling SPM on Windows]
SpmBenchmarks - benchmarks from machines running SPM
For help on SPM and other analysis topics, see AnalysisHelp