Getting started with SPM

This is a practical guide to using SPM. If you're after theory, you might want the Analysis Principles section from the menu on the left.

• SpmVersions - and how to launch them at the CBU

SPM tips and tools

• [http://www.sph.sc.edu/comd/rorden/mritut.html Normalizing anatomical MRI scans of damaged brains] using SPM and MRIcro.

• MaskedEpiNormalization - using the EPIs for spatial normalization.

• SpmPlottingAdjustedData

• DisplaySlices - display multiple image slices with activation data using matlab / SPM

• Changing the location of images in an SPM design with SpmAnaCd

• SpmTips - not otherwise classified tips and fixes

Automating SPM

• [:AutomaticAnalysisIntroduction:aa] - automating SPM analyses

• SpmBatch - batching SPM jobs

Programming with SPM

• SpmGraphics - using the SPM output graphics for making figures

• TrimmingImages using SPM

• [http://www-psych.stanford.edu/~kalina/SPM99/ Kalina Christoff's SPM99 page] - a variety of interesting programs, protocols and discussions.

• BasicProgrammingWithSpm

• SpmManuals

Benchmarking SPM

• SpmWithPentium4 - tuning SPM for the Pentium 4 chip

• [http://gnumex.sourceforge.net/ Compiling SPM on Windows]

• SpmBenchmarks - benchmarks from machines running SPM

• TestsNewConfigJuly2009 - testing different configurations of Linux with various neuroimaging packages

For help on SPM and other analysis topics, see AnalysisHelp