= Getting started with SPM =
This is a practical guide to using SPM. If you're after theory, you might want the Analysis Principles section from the menu on the left.

 * SpmVersions - and how to launch them at the CBU

= SPM tips and tools=

 * [http://www.sph.sc.edu/comd/rorden/mritut.html Normalizing anatomical MRI scans of damaged brains] using SPM and MRIcro.
 * MaskedEpiNormalization - using the EPIs for spatial normalization. 
 * SpmPlottingAdjustedData
 * DisplaySlices - display multiple image slices with activation data using matlab / SPM
 * Changing the location of images in an SPM design with SpmAnaCd
 * SpmTips - not otherwise classified tips and fixes

= Automating SPM =
 * [:AutomaticAnalysisIntroduction:aa] - automating SPM analyses
 * SpmBatch - batching SPM jobs

= Programming with SPM =
 * SpmGraphics - using the SPM output graphics for making figures
 * TrimmingImages using SPM
 * [http://www-psych.stanford.edu/~kalina/SPM99/ Kalina Christoff's SPM99 page] - a variety of interesting programs, protocols and discussions.
 * BasicProgrammingWithSpm
 * SpmManuals
 * The [http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/ Human Brain Function book] - these are a series of chapters covering theory and to some extent implementation in SPM of the areas below. Be warned that some of these chapters are aimed at quite a high level, and may be hard to follow for those without relevant background. 
 * [http://www.fil.ion.ucl.ac.uk/spm/dox.html Papers published by the FIL group on SPM] - these are available online via the SPM website, as are some other important papers on related theory.
 * [http://www.fil.ion.ucl.ac.uk/spm/course/ SPM course notes]

* SpmWithPentium4 - tuning SPM for the Pentium 4 chip
 * [http://gnumex.sourceforge.net/ Compiling SPM on Windows]
 * SpmBenchmarks - benchmarks from machines running SPM



For help on SPM and other analysis topics, see AnalysisHelp