<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>AnalyzingData/MNE_CheckBEM</title><revhistory><revision><revnumber>2</revnumber><date>2013-03-08 10:02:25</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>1</revnumber><date>2012-04-12 15:54:40</date><authorinitials>YaaraErez</authorinitials></revision></revhistory></articleinfo><section><title>Check BEM Surfaces</title><para>Set up your Freesurfer environment. </para><para>Set SUBJECTS_DIR to your MRI directory. </para><para>Load an MRI image: </para><screen><![CDATA[tkmedit YourSubject T1.mgz]]></screen><para>Choose &quot;File -&gt; Load Main Surface&quot;, then &quot;Browse&quot;. Go to the &quot;bem&quot; sub-directory (you are in &quot;surf&quot;). </para><para>Choose a surface, e.g. &quot;inner_skull-5120.surf&quot;, then &quot;OK&quot;.  </para><para>The surface should be shown on the MRI image. Use for example &quot;Slice&quot; to navigate. </para></section></article>