In order to use MNE, you have to run the setup command:
mne_setup_2.6.0
for Version 2.6, or
mne_setup_2.7.0_32bit
for Version 2.7.
For most operations, MNE expects that the environment variable SUBJECTS_DIR is set, e.g.
setenv SUBJECTS_DIR /mydatadirectory/MRIs
and in some cases also the SUBJECT variable:
setenv SUBJECT /mydatadirectory/Subject1
MNE Version 2.6
If you want to use the MNE Matlab toolbox on a regular basis, you should add the line
run /imaging/local/linux/mne_2.6.0/mne/matlab/toolbox/mne_setup_toolbox.m
to your startup.m file.
If you run mne_setup_2.6.0 before starting Matlab, it will automatically add the paths to the MNE tools.
MNE Version 2.7
Add the following to your Matlab startup.m file:
%---------------------- MNE --------------------------%
mnehome = getenv('MNE_ROOT');
mnematlab = sprintf('%s/share/matlab',mnehome);
if (exist(mnematlab) == 7)
path(path,mnematlab);
end
clear mnehome mnematlab;
%-----------------------------------------------------%If you run mne_setup_2.7.0_32bit before starting Matlab, it will automatically add the paths to the MNE tools.