<?xml version="1.0" encoding="utf-8"?><!DOCTYPE article  PUBLIC '-//OASIS//DTD DocBook XML V4.4//EN'  'http://www.docbook.org/xml/4.4/docbookx.dtd'><article><articleinfo><title>AnalyzingData</title><revhistory><revision><revnumber>72</revnumber><date>2013-03-08 10:02:25</date><authorinitials>localhost</authorinitials><revremark>converted to 1.6 markup</revremark></revision><revision><revnumber>71</revnumber><date>2013-02-04 15:04:50</date><authorinitials>OlafHauk</authorinitials></revision><revision><revnumber>70</revnumber><date>2011-09-09 11:40:45</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>69</revnumber><date>2011-01-28 14:11:30</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>68</revnumber><date>2010-10-14 11:40:35</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>67</revnumber><date>2010-10-06 17:47:08</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>66</revnumber><date>2010-09-15 11:41:41</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>65</revnumber><date>2010-06-10 12:12:42</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>64</revnumber><date>2010-04-15 12:54:14</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>63</revnumber><date>2010-04-15 12:52:22</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>62</revnumber><date>2010-01-20 16:45:16</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>61</revnumber><date>2010-01-13 12:08:06</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>60</revnumber><date>2010-01-13 12:07:10</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>59</revnumber><date>2010-01-13 11:51:59</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>58</revnumber><date>2010-01-11 15:07:16</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>57</revnumber><date>2010-01-11 14:56:46</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>56</revnumber><date>2010-01-11 14:47:18</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>55</revnumber><date>2010-01-11 14:41:55</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>54</revnumber><date>2010-01-11 13:17:35</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>53</revnumber><date>2010-01-11 13:12:38</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>52</revnumber><date>2010-01-11 13:11:23</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>51</revnumber><date>2010-01-11 13:10:40</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>50</revnumber><date>2010-01-11 13:08:03</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>49</revnumber><date>2010-01-11 13:07:34</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>48</revnumber><date>2010-01-11 13:03:49</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>47</revnumber><date>2010-01-11 12:57:40</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>46</revnumber><date>2010-01-11 12:56:34</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>45</revnumber><date>2010-01-11 12:41:38</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>44</revnumber><date>2010-01-11 12:40:54</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>43</revnumber><date>2010-01-11 12:33:32</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>42</revnumber><date>2010-01-11 12:25:14</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>41</revnumber><date>2010-01-11 12:24:35</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>40</revnumber><date>2010-01-11 12:24:16</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>39</revnumber><date>2010-01-11 12:23:24</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>38</revnumber><date>2010-01-11 12:19:31</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>37</revnumber><date>2010-01-11 12:18:54</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>36</revnumber><date>2010-01-11 12:08:30</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>35</revnumber><date>2009-11-18 10:25:23</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>34</revnumber><date>2009-04-20 16:37:15</date><authorinitials>JonathanPeelle</authorinitials><revremark>added link to IdentifyingEventsWithTriggers</revremark></revision><revision><revnumber>33</revnumber><date>2009-03-31 14:49:35</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>32</revnumber><date>2009-03-31 14:47:14</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>31</revnumber><date>2009-03-31 14:46:28</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>30</revnumber><date>2009-03-31 14:44:37</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>29</revnumber><date>2009-01-13 19:57:07</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>28</revnumber><date>2009-01-13 19:40:10</date><authorinitials>YaaraErez</authorinitials></revision><revision><revnumber>27</revnumber><date>2008-07-10 17:28:28</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>26</revnumber><date>2008-07-10 11:33:50</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>25</revnumber><date>2008-07-10 11:33:21</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>24</revnumber><date>2008-07-10 11:32:57</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>23</revnumber><date>2008-05-30 11:57:00</date><authorinitials>MaartenVanCasteren</authorinitials></revision><revision><revnumber>22</revnumber><date>2008-03-11 15:20:01</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>21</revnumber><date>2008-03-11 15:19:10</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>20</revnumber><date>2008-03-11 15:18:45</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>19</revnumber><date>2008-01-01 08:27:56</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>18</revnumber><date>2007-10-22 14:08:16</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>17</revnumber><date>2007-08-07 13:12:57</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>16</revnumber><date>2007-06-07 14:56:52</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>15</revnumber><date>2007-05-16 21:00:32</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>14</revnumber><date>2007-05-02 17:35:14</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>13</revnumber><date>2007-05-02 17:14:19</date><authorinitials>YuryShtyrov</authorinitials></revision><revision><revnumber>12</revnumber><date>2007-04-14 13:39:52</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>11</revnumber><date>2007-04-14 13:39:20</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>10</revnumber><date>2007-04-14 13:36:15</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>9</revnumber><date>2007-04-14 13:30:57</date><authorinitials>RikHenson</authorinitials></revision><revision><revnumber>8</revnumber><date>2007-03-09 10:52:38</date><authorinitials>DannyMitchell2</authorinitials></revision><revision><revnumber>7</revnumber><date>2007-03-09 10:36:56</date><authorinitials>DannyMitchell2</authorinitials></revision><revision><revnumber>6</revnumber><date>2007-03-09 10:36:33</date><authorinitials>DannyMitchell2</authorinitials></revision><revision><revnumber>5</revnumber><date>2007-03-09 10:02:48</date><authorinitials>DannyMitchell2</authorinitials></revision><revision><revnumber>4</revnumber><date>2007-03-06 18:22:55</date><authorinitials>RhodriCusack</authorinitials></revision><revision><revnumber>3</revnumber><date>2007-02-21 15:34:20</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>2</revnumber><date>2007-02-21 15:24:58</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision><revision><revnumber>1</revnumber><date>2007-02-15 16:04:29</date><authorinitials>devel03.mrc-cbu.cam.ac.uk</authorinitials></revision></revhistory></articleinfo><para><inlinemediaobject><imageobject><imagedata fileref="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/meg/AnalyzingData?action=AttachFile&amp;do=get&amp;target=mrclogo.gif"/></imageobject><textobject><phrase>mrclogo.gif</phrase></textobject></inlinemediaobject> </para><section><title>Analysing data</title><para>There are several options for analysing MEG and EEG data from the Neuromag machine at the CBU: </para><section><title>FreewarePackages</title><para>These are the most intensively used freeware software packages for EEG/MEG analysis at the CBU: </para><informaltable><tgroup cols="3"><colspec colname="col_0"/><colspec colname="col_1"/><colspec colname="col_2"/><tbody><row rowsep="1"><entry colsep="1" rowsep="1"><para><emphasis role="strong"><ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/SpmAnalysis">SPM</ulink></emphasis> </para></entry><entry colsep="1" rowsep="1"><para><emphasis role="strong"><ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_overview">MNE</ulink></emphasis> </para></entry><entry colsep="1" rowsep="1"><para><emphasis role="strong"><ulink url="http://fieldtrip.fcdonders.nl/">Fieldtrip</ulink></emphasis>, <emphasis role="strong"><ulink url="http://imaging.mrc-cbu.cam.ac.uk/imaging/FieldtripAnalysis">Fieldtrip at CBU</ulink></emphasis> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>developed at the <ulink url="http://www.fil.ion.ucl.ac.uk/spm/">FIL</ulink> and at the <ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/SpmAnalysis">CBU</ulink>. </para></entry><entry colsep="1" rowsep="1"><para>developed at <ulink url="http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/sofMNE.php">MGH</ulink> </para></entry><entry colsep="1" rowsep="1"><para>developed at the <ulink url="http://www.ru.nl/neuroimaging/">Donders centre</ulink>. </para></entry></row></tbody></tgroup></informaltable><para>For some more details look <ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/FreewarePackages">here</ulink>. For an introduction and overview to different analysis approaches see our <ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/MEGday29Jan10">&quot;MEG day&quot; presentations</ulink>. </para><para>Other options are: </para><informaltable><tgroup cols="2"><colspec colname="col_0"/><colspec colname="col_1"/><tbody><row rowsep="1"><entry colsep="1" rowsep="1"><para><emphasis role="strong"><ulink url="http://sccn.ucsd.edu/eeglab">EEGLAB</ulink></emphasis> </para></entry><entry colsep="1" rowsep="1"><para><emphasis role="strong"><ulink url="http://nutmeg.berkeley.edu">NUTMEG</ulink></emphasis> </para></entry></row><row rowsep="1"><entry colsep="1" rowsep="1"><para>Matlab toolbox for EEG analysis (incl. ICA) </para></entry><entry colsep="1" rowsep="1"><para> MEG/EEG analysis toolbox in conjunction with SPM8 </para></entry></row></tbody></tgroup></informaltable></section><section><title>CommercialPackages</title><para>We've got one or more licenses for the following software packages: </para><informaltable><tgroup cols="5"><colspec colname="col_0"/><colspec colname="col_1"/><colspec colname="col_2"/><colspec colname="col_3"/><colspec colname="col_4"/><tbody><row rowsep="1"><entry colsep="1" rowsep="1"><para><ulink url="http://www.neuroscan.com/curry.cfm">CURRY</ulink> </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="http://www.besa.de/">BESA</ulink> </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="http://www.ant-neuro.com/products/asa">ASA</ulink> </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="http://www.sourcesignal.com/">EMSE</ulink> </para></entry><entry colsep="1" rowsep="1"><para> <ulink url="http://www.brainproducts.com/productdetails.php?id=17">BrainVision Analyzer</ulink> </para></entry></row></tbody></tgroup></informaltable></section><section><title>Neuromag Software</title><para>The <ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/NeuromagSoftware">Neuromag software</ulink> is part of the <ulink url="http://www.elekta.com/healthcare_international_elekta_neuromag.php">Elekta Neuromag MEG system</ulink> (<ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/VectorviewDescription">Vectorview configuration</ulink>). You can get a general idea about the analysis pathway from the <ulink url="https://lsr-wiki-01.mrc-cbu.cam.ac.uk/meg/AnalyzingData/meg/AnalyzingData?action=AttachFile&amp;do=get&amp;target=MEGAnalysisLectureJan07CBU.pdf">CBU introductory lecture into MEG analysis</ulink> (the slides do not include the live software demos given at the lecture). </para></section><section><title>MaxFilter</title><para><ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/Maxfilter">MaxFilter</ulink> is an essential pre-processing tool for MEG data, in order to remove noise sources likely to originate from outside the sensor array. </para></section><section><title>More info on pre-processing (e.g. trigger coding)</title><para><ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/preprocessing">Pre-processing pages</ulink> </para></section><section><title>If all this is new to you...</title><para>...you should start on our <ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/Beginners">Beginners' Pages</ulink>, with links to tutorials and more information on Matlab, Linux, Python etc. </para></section><section><title>Literature, Mailing Lists, Web-Sites and Events around MEG</title><para>Here you can find <ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/MEGpapers">a list of papers</ulink> and <ulink url="http://imaging.mrc-cbu.cam.ac.uk/meg/MailingLists">of mailing lists, web-sites and events</ulink> for various MEG-related topics. </para></section></section></article>