MEG Freeware Packages

There are many available; here are some (some comments may reflect ignorance!)

SPM5

Advantages:

• Much experience at CBU, integrated with fMRI analysis
• Matlab, so readable and extendable
• Advanced statistical methods (e.g, for multiple comparisons across space or time),
• Novel variants of the L2-norm approach to the inverse problem
• Group-based analysis (eg in MNI/Talairach space).

Disadvantages:

• Slow graphics
• No ECD for MEG (yet)

Official website: http://www.fil.ion.ucl.ac.uk/spm/

Currently installed on all Linux Boxes (lowest load box selected by spm 5 eeg at linux prompt)

For more details, see here SpmAnalysis

MNE (Minimum Norm Estimates)

Advantages:

• Advanced distributed solution methods (by Matti Hämäläinen, a long-standing expert with strong links to Neuromag)
• Excellent, fast graphics

• Linked with Free Surfer http://imaging.mrc-cbu.cam.ac.uk/imaging/FreesurferInformation (advanced software for MRI segmentation, extraction of cortical surfaces, and inflation/normalisation)

• Matlab Toolbox, for exporting and importing data

Disadvantages:

• Compiled code, so difficult to extend
• No ECD for MEG (yet; can visualize xfit ECD)

Official website: http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/sofMNE.php

Installed on Linux Boxes. All Graphical tools must be used in the computing room on lws001, lws002, lws004, lws005, lws006 or using a vncserver.glx session (see http://imaging.mrc-cbu.cam.ac.uk/imaging/ImagingComputingDevelopments).

To do the tutorial use mne_tutorial instead of mne_setup_2.5

DansPage

CBU Data Screening Tool

In-house CBU utilities (matlab) for quality control of your data prior to further processing. More here: DataScreeiningTool

FieldTrip

Advantages:

• Strong in oscillatory analysis (time-frequency, coherence) and beamformers (eg DICS)
• In Matlab, so easily readable and extendable

Official website: http://www.ru.nl/fcdonders/fieldtrip/

Yet Others

• FIFFACCESS for simply reading FIF data into Matlab, more here: ReadingDataInMatlab

• EEGLAB (good for ICA) http://www.sccn.ucsd.edu/eeglab/

• Brainstorm (good for forward models) http://neuroimage.usc.edu/brainstorm/

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