AFNI installation notes
http://afni.nimh.nih.gov/pub/dist/HOWTO//howto/ht00_inst/html/index.shtml
http://afni.nimh.nih.gov/pub/dist/HOWTO//howto/ht00_inst/html/linux_comp.shtml
http://lcni.uoregon.edu/mediawiki/index.php/GENTOO:Install_AFNI
For the imaging servers
release=0841 cd /imaging/matthew/installs wget http://afni.nimh.nih.gov/pub/dist/tgz/afni_src.tgz tar zxvf afni_src.tgz release_dir=afni_src_$release mv afni_src $release_dir cd $release_dir make -f Makefile.linux_gcc32 totality suma cp linux_gcc32/* /imaging/local/linux/afni/bin
Optional installs (docs, data)
This lifted from http://lcni.uoregon.edu/mediawiki/index.php/GENTOO:Install_AFNI with thanks.
Install docs
wget http://afni.nimh.nih.gov/pub/dist/tgz/afni_doc.tgz tar xfz afni_doc.tgz mv afni_doc /imaging/local/linux/afni/doc
Install sample data
wget http://afni.nimh.nih.gov/pub/dist/edu/data/AFNI_data1.tgz wget http://afni.nimh.nih.gov/pub/dist/edu/data/AFNI_data2.tgz wget http://afni.nimh.nih.gov/pub/dist/edu/data/SUMA_demo.tgz wget http://afni.nimh.nih.gov/pub/dist/edu/data/SUMA_StandardMeshes.tgz wget http://afni.nimh.nih.gov/sscc/staff/ziad/SUMA/SUMA_demo-FS.tgz mv AFNI_data?.tgz SUMA_*.tgz /imaging/local/linux/afni/data cd /imaging/local/linux/afni/data tar xfz AFNI_data1.tgz tar xfz AFNI_data2.tgz tar xfz SUMA_demo.tgz tar xfz SUMA_StandardMeshes.tgz mkdir suma_demo cd suma_demo tar xvfz ../SUMA_demo-FS.tgz cd .. rm -f AFNI_data?.tgz SUMA_*.tgz
AFNI's Talairach dataset
wget http://afni.nimh.nih.gov/pub/dist/tgz/TTatlas+tlrc.HEAD wget http://afni.nimh.nih.gov/pub/dist/tgz/TTatlas+tlrc.BRIK.gz mv TTatlas+tlrc.* /imaging/local/linux/afni/bin